[2024-11-28 00:56:55,335] multiqc                                            [DEBUG  ]  No MultiQC config found: /app/pipeline/.snakemake/conda/1e782eed77ee31be1da1fbe728db2a6f_/lib/python2.7/site-packages/multiqc-1.0.dev0-py2.7.egg/multiqc_config.yaml
[2024-11-28 00:56:55,335] multiqc                                            [DEBUG  ]  No MultiQC config found: /home/django/.multiqc_config.yaml
[2024-11-28 00:56:55,335] multiqc                                            [DEBUG  ]  No MultiQC config found: multiqc_config.yaml
[2024-11-28 00:56:55,335] multiqc                                            [DEBUG  ]  Command used: /app/pipeline/.snakemake/conda/1e782eed77ee31be1da1fbe728db2a6f_/bin/multiqc --force -o /app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/multiqc -n multiqc.html /app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/star/SRR12535878 /app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/star/SRR14284493 /app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/cleaned /app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/star/SRR14284494 /app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/read_composition_wo_filter /app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/fastqc/cleaned /app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/star/SRR12535752
[2024-11-28 00:56:55,335] multiqc                                            [DEBUG  ]  Could not connect to multiqc.info for version check
[2024-11-28 00:56:55,335] multiqc                                            [INFO   ]  This is MultiQC v1.0.dev0
[2024-11-28 00:56:55,335] multiqc                                            [DEBUG  ]  Command     : /app/pipeline/.snakemake/conda/1e782eed77ee31be1da1fbe728db2a6f_/bin/multiqc --force -o /app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/multiqc -n multiqc.html /app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/star/SRR12535878 /app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/star/SRR14284493 /app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/cleaned /app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/star/SRR14284494 /app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/read_composition_wo_filter /app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/fastqc/cleaned /app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/star/SRR12535752
[2024-11-28 00:56:55,335] multiqc                                            [DEBUG  ]  Working dir : /app/pipeline
[2024-11-28 00:56:55,335] multiqc                                            [INFO   ]  Template    : default
[2024-11-28 00:56:55,335] multiqc                                            [DEBUG  ]  Running in --force mode, will overwrite any existing reports.
[2024-11-28 00:56:55,335] multiqc                                            [INFO   ]  Searching '/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/star/SRR12535878'
[2024-11-28 00:56:55,335] multiqc                                            [INFO   ]  Searching '/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/star/SRR14284493'
[2024-11-28 00:56:55,335] multiqc                                            [INFO   ]  Searching '/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/cleaned'
[2024-11-28 00:56:55,335] multiqc                                            [INFO   ]  Searching '/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/star/SRR14284494'
[2024-11-28 00:56:55,335] multiqc                                            [INFO   ]  Searching '/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/read_composition_wo_filter'
[2024-11-28 00:56:55,335] multiqc                                            [INFO   ]  Searching '/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/fastqc/cleaned'
[2024-11-28 00:56:55,335] multiqc                                            [INFO   ]  Searching '/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/star/SRR12535752'
[2024-11-28 00:56:55,335] multiqc                                            [DEBUG  ]  Analysing modules: custom_content, peddy, methylQA, qualimap, preseq, quast, rseqc, busco, goleft_indexcov, snpeff, gatk, htseq, bcftools, featureCounts, picard, prokka, samblaster, samtools, bamtools, bismark, hicup, salmon, kallisto, slamdunk, star, tophat, bowtie2, bowtie1, cutadapt, trimmomatic, skewer, fastq_screen, fastqc, clusterflow
[2024-11-28 00:56:55,336] multiqc                                            [DEBUG  ]  Using temporary directory for creating report: /tmp/tmpGuLRTp
[2024-11-28 00:56:55,340] multiqc                                            [DEBUG  ]  Ignoring file as matched an ignore pattern: Aligned.out.bam
[2024-11-28 00:56:55,341] multiqc                                            [DEBUG  ]  Ignoring file as matched an ignore pattern: Aligned.out.bam
[2024-11-28 00:56:55,341] multiqc                                            [DEBUG  ]  Ignoring file as too large: SRR12535878.info.csv
[2024-11-28 00:56:55,341] multiqc                                            [DEBUG  ]  Ignoring file as too large: SRR14284493.info.csv
[2024-11-28 00:56:55,341] multiqc                                            [DEBUG  ]  Ignoring file as matched an ignore pattern: SRR14284493.fastq.gz
[2024-11-28 00:56:55,341] multiqc                                            [DEBUG  ]  Ignoring file as matched an ignore pattern: SRR14284494.fastq.gz
[2024-11-28 00:56:55,341] multiqc                                            [DEBUG  ]  Ignoring file as too large: SRR14284494.info.csv
[2024-11-28 00:56:55,342] multiqc                                            [DEBUG  ]  Ignoring file as too large: SRR12535878.too_short.fa
[2024-11-28 00:56:55,342] multiqc                                            [DEBUG  ]  Ignoring file as too large: SRR14284494.too_short.fa
[2024-11-28 00:56:55,342] multiqc                                            [DEBUG  ]  Ignoring file as too large: SRR14284493.too_short.fa
[2024-11-28 00:56:55,342] multiqc                                            [DEBUG  ]  Ignoring file as too large: SRR12535752.too_short.fa
[2024-11-28 00:56:55,342] multiqc                                            [DEBUG  ]  Ignoring file as matched an ignore pattern: SRR12535752.fastq.gz
[2024-11-28 00:56:55,342] multiqc                                            [DEBUG  ]  Ignoring file as matched an ignore pattern: SRR12535878.fastq.gz
[2024-11-28 00:56:55,342] multiqc                                            [DEBUG  ]  Ignoring file as too large: SRR12535752.info.csv
[2024-11-28 00:56:55,342] multiqc                                            [DEBUG  ]  Ignoring file as matched an ignore pattern: Aligned.out.bam
[2024-11-28 00:56:55,343] multiqc                                            [DEBUG  ]  Ignoring file as too large: SRR14284494.bam.featureCounts
[2024-11-28 00:56:55,343] multiqc                                            [DEBUG  ]  Ignoring file as too large: SRR12535752
[2024-11-28 00:56:55,343] multiqc                                            [DEBUG  ]  Ignoring file as too large: SRR12535878.bam.featureCounts
[2024-11-28 00:56:55,343] multiqc                                            [DEBUG  ]  Ignoring file as matched an ignore pattern: SRR14284493.bam
[2024-11-28 00:56:55,343] multiqc                                            [DEBUG  ]  Ignoring file as too large: SRR12535752.bam.featureCounts
[2024-11-28 00:56:55,343] multiqc                                            [DEBUG  ]  Ignoring file as matched an ignore pattern: SRR14284494.bam
[2024-11-28 00:56:55,343] multiqc                                            [DEBUG  ]  Ignoring file as matched an ignore pattern: SRR12535878.bam
[2024-11-28 00:56:55,343] multiqc                                            [DEBUG  ]  Ignoring file as too large: SRR12535878
[2024-11-28 00:56:55,344] multiqc                                            [DEBUG  ]  Ignoring file as too large: SRR14284494
[2024-11-28 00:56:55,344] multiqc                                            [DEBUG  ]  Ignoring file as matched an ignore pattern: SRR12535752.bam
[2024-11-28 00:56:55,344] multiqc                                            [DEBUG  ]  Ignoring file as too large: SRR14284493.bam.featureCounts
[2024-11-28 00:56:55,344] multiqc                                            [DEBUG  ]  Ignoring file as too large: SRR14284493
[2024-11-28 00:56:55,344] multiqc                                            [DEBUG  ]  Ignoring file as matched an ignore pattern: Aligned.out.bam
[2024-11-28 00:56:56,002] multiqc.modules.custom_content.custom_content      [DEBUG  ]  No custom content found
[2024-11-28 00:56:56,013] multiqc.modules.peddy.peddy                        [DEBUG  ]  Could not find any reports in ('/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/star/SRR12535878', '/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/star/SRR14284493', '/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/cleaned', '/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/star/SRR14284494', '/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/read_composition_wo_filter', '/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/fastqc/cleaned', '/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/star/SRR12535752')
[2024-11-28 00:56:56,017] multiqc.modules.methylQA.methylQA                  [DEBUG  ]  Could not find any reports in ('/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/star/SRR12535878', '/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/star/SRR14284493', '/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/cleaned', '/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/star/SRR14284494', '/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/read_composition_wo_filter', '/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/fastqc/cleaned', '/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/star/SRR12535752')
[2024-11-28 00:56:56,023] multiqc.modules.qualimap.QM_BamQC                  [DEBUG  ]  Using default Qualimap thresholds: 1, 5, 10, 30, 50
[2024-11-28 00:56:56,035] multiqc.modules.qualimap.qualimap                  [DEBUG  ]  Could not find any reports in ('/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/star/SRR12535878', '/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/star/SRR14284493', '/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/cleaned', '/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/star/SRR14284494', '/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/read_composition_wo_filter', '/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/fastqc/cleaned', '/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/star/SRR12535752')
[2024-11-28 00:56:56,366] multiqc.modules.preseq.preseq                      [DEBUG  ]  Could not find any preseq data in ('/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/star/SRR12535878', '/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/star/SRR14284493', '/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/cleaned', '/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/star/SRR14284494', '/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/read_composition_wo_filter', '/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/fastqc/cleaned', '/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/star/SRR12535752')
[2024-11-28 00:56:56,371] multiqc.modules.quast.quast                        [DEBUG  ]  Could not find any reports in ('/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/star/SRR12535878', '/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/star/SRR14284493', '/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/cleaned', '/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/star/SRR14284494', '/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/read_composition_wo_filter', '/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/fastqc/cleaned', '/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/star/SRR12535752')
[2024-11-28 00:56:57,122] multiqc.modules.rseqc.rseqc                        [DEBUG  ]  Could not find any reports in ('/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/star/SRR12535878', '/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/star/SRR14284493', '/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/cleaned', '/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/star/SRR14284494', '/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/read_composition_wo_filter', '/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/fastqc/cleaned', '/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/star/SRR12535752')
[2024-11-28 00:56:57,127] multiqc.modules.busco.busco                        [DEBUG  ]  Could not find any reports in ('/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/star/SRR12535878', '/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/star/SRR14284493', '/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/cleaned', '/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/star/SRR14284494', '/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/read_composition_wo_filter', '/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/fastqc/cleaned', '/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/star/SRR12535752')
[2024-11-28 00:56:57,134] multiqc.modules.goleft_indexcov.goleft_indexcov    [DEBUG  ]  Did not find goleft indexcov outputs in ('/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/star/SRR12535878', '/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/star/SRR14284493', '/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/cleaned', '/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/star/SRR14284494', '/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/read_composition_wo_filter', '/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/fastqc/cleaned', '/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/star/SRR12535752')
[2024-11-28 00:56:57,320] multiqc.modules.snpeff.snpeff                      [DEBUG  ]  Could not find any data in ('/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/star/SRR12535878', '/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/star/SRR14284493', '/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/cleaned', '/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/star/SRR14284494', '/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/read_composition_wo_filter', '/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/fastqc/cleaned', '/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/star/SRR12535752')
[2024-11-28 00:56:57,503] multiqc.modules.gatk.gatk                          [DEBUG  ]  Could not find any reports in ('/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/star/SRR12535878', '/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/star/SRR14284493', '/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/cleaned', '/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/star/SRR14284494', '/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/read_composition_wo_filter', '/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/fastqc/cleaned', '/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/star/SRR12535752')
[2024-11-28 00:56:57,684] multiqc.modules.htseq.htseq                        [DEBUG  ]  Could not find any reports in ('/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/star/SRR12535878', '/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/star/SRR14284493', '/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/cleaned', '/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/star/SRR14284494', '/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/read_composition_wo_filter', '/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/fastqc/cleaned', '/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/star/SRR12535752')
[2024-11-28 00:56:57,868] multiqc.modules.bcftools.bcftools                  [DEBUG  ]  Could not find any reports in ('/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/star/SRR12535878', '/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/star/SRR14284493', '/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/cleaned', '/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/star/SRR14284494', '/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/read_composition_wo_filter', '/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/fastqc/cleaned', '/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/star/SRR12535752')
[2024-11-28 00:56:57,873] multiqc.modules.featureCounts.feature_counts       [DEBUG  ]  Duplicate sample name found! Overwriting: SRR12535878
[2024-11-28 00:56:57,874] multiqc.modules.featureCounts.feature_counts       [DEBUG  ]  Duplicate sample name found! Overwriting: SRR14284493
[2024-11-28 00:56:57,874] multiqc.modules.featureCounts.feature_counts       [DEBUG  ]  Duplicate sample name found! Overwriting: SRR12535752
[2024-11-28 00:56:57,874] multiqc.modules.featureCounts.feature_counts       [DEBUG  ]  Duplicate sample name found! Overwriting: SRR14284494
[2024-11-28 00:56:57,875] multiqc.modules.featureCounts.feature_counts       [INFO   ]  Found 4 reports
[2024-11-28 00:56:59,900] multiqc.modules.picard.picard                      [DEBUG  ]  Could not find any reports in ('/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/star/SRR12535878', '/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/star/SRR14284493', '/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/cleaned', '/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/star/SRR14284494', '/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/read_composition_wo_filter', '/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/fastqc/cleaned', '/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/star/SRR12535752')
[2024-11-28 00:56:59,905] multiqc.modules.prokka.prokka                      [DEBUG  ]  Could not find any Prokka data in ('/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/star/SRR12535878', '/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/star/SRR14284493', '/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/cleaned', '/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/star/SRR14284494', '/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/read_composition_wo_filter', '/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/fastqc/cleaned', '/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/star/SRR12535752')
[2024-11-28 00:57:00,089] multiqc.modules.samblaster.samblaster              [DEBUG  ]  Could not find any data in ('/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/star/SRR12535878', '/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/star/SRR14284493', '/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/cleaned', '/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/star/SRR14284494', '/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/read_composition_wo_filter', '/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/fastqc/cleaned', '/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/star/SRR12535752')
[2024-11-28 00:57:00,637] multiqc.modules.samtools.samtools                  [DEBUG  ]  Could not find any reports in ('/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/star/SRR12535878', '/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/star/SRR14284493', '/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/cleaned', '/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/star/SRR14284494', '/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/read_composition_wo_filter', '/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/fastqc/cleaned', '/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/star/SRR12535752')
[2024-11-28 00:57:00,821] multiqc.modules.bamtools.bamtools                  [DEBUG  ]  Could not find any reports in ('/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/star/SRR12535878', '/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/star/SRR14284493', '/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/cleaned', '/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/star/SRR14284494', '/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/read_composition_wo_filter', '/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/fastqc/cleaned', '/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/star/SRR12535752')
[2024-11-28 00:57:00,835] multiqc.modules.bismark.bismark                    [DEBUG  ]  Could not find any reports in ('/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/star/SRR12535878', '/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/star/SRR14284493', '/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/cleaned', '/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/star/SRR14284494', '/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/read_composition_wo_filter', '/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/fastqc/cleaned', '/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/star/SRR12535752')
[2024-11-28 00:57:00,840] multiqc.modules.hicup.hicup                        [DEBUG  ]  Could not find any HiCUP data in ('/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/star/SRR12535878', '/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/star/SRR14284493', '/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/cleaned', '/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/star/SRR14284494', '/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/read_composition_wo_filter', '/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/fastqc/cleaned', '/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/star/SRR12535752')
[2024-11-28 00:57:00,847] multiqc.modules.salmon.salmon                      [DEBUG  ]  Could not find any Salmon data in ('/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/star/SRR12535878', '/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/star/SRR14284493', '/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/cleaned', '/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/star/SRR14284494', '/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/read_composition_wo_filter', '/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/fastqc/cleaned', '/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/star/SRR12535752')
[2024-11-28 00:57:01,029] multiqc.modules.kallisto.kallisto                  [DEBUG  ]  Could not find any reports in ('/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/star/SRR12535878', '/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/star/SRR14284493', '/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/cleaned', '/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/star/SRR14284494', '/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/read_composition_wo_filter', '/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/fastqc/cleaned', '/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/star/SRR12535752')
[2024-11-28 00:57:02,122] multiqc.modules.slamdunk.slamdunk                  [DEBUG  ]  No slamdunk reports found.
[2024-11-28 00:57:02,133] multiqc.modules.star.star                          [INFO   ]  Found 4 reports
[2024-11-28 00:57:02,139] multiqc.modules.tophat.tophat                      [DEBUG  ]  Could not find any reports in ('/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/star/SRR12535878', '/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/star/SRR14284493', '/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/cleaned', '/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/star/SRR14284494', '/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/read_composition_wo_filter', '/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/fastqc/cleaned', '/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/star/SRR12535752')
[2024-11-28 00:57:02,321] multiqc.modules.bowtie2.bowtie2                    [DEBUG  ]  Could not find any reports in ('/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/star/SRR12535878', '/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/star/SRR14284493', '/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/cleaned', '/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/star/SRR14284494', '/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/read_composition_wo_filter', '/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/fastqc/cleaned', '/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/star/SRR12535752')
[2024-11-28 00:57:02,504] multiqc.modules.bowtie1.bowtie1                    [DEBUG  ]  Could not find any reports in ('/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/star/SRR12535878', '/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/star/SRR14284493', '/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/cleaned', '/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/star/SRR14284494', '/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/read_composition_wo_filter', '/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/fastqc/cleaned', '/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/star/SRR12535752')
[2024-11-28 00:57:02,704] multiqc.modules.cutadapt.cutadapt                  [INFO   ]  Found 4 reports
[2024-11-28 00:57:02,884] multiqc.modules.trimmomatic.trimmomatic            [DEBUG  ]  Could not find any Trimmomatic data in ('/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/star/SRR12535878', '/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/star/SRR14284493', '/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/cleaned', '/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/star/SRR14284494', '/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/read_composition_wo_filter', '/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/fastqc/cleaned', '/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/star/SRR12535752')
[2024-11-28 00:57:03,074] multiqc.modules.skewer.skewer                      [DEBUG  ]  Could not find any data in ('/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/star/SRR12535878', '/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/star/SRR14284493', '/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/cleaned', '/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/star/SRR14284494', '/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/read_composition_wo_filter', '/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/fastqc/cleaned', '/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/star/SRR12535752')
[2024-11-28 00:57:03,079] multiqc.modules.fastq_screen.fastq_screen          [DEBUG  ]  Could not find any reports in ('/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/star/SRR12535878', '/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/star/SRR14284493', '/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/cleaned', '/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/star/SRR14284494', '/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/read_composition_wo_filter', '/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/fastqc/cleaned', '/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/star/SRR12535752')
[2024-11-28 00:57:03,121] multiqc.modules.fastqc.fastqc                      [INFO   ]  Found 4 reports
[2024-11-28 00:57:03,285] multiqc.modules.clusterflow.clusterflow            [DEBUG  ]  Could not find any reports in ('/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/star/SRR12535878', '/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/star/SRR14284493', '/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/cleaned', '/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/star/SRR14284494', '/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/read_composition_wo_filter', '/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/fastqc/cleaned', '/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/star/SRR12535752')
[2024-11-28 00:57:03,287] multiqc                                            [INFO   ]  Report      : ../data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/multiqc/multiqc.html
[2024-11-28 00:57:03,287] multiqc                                            [WARNING]  Deleting    : ../data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/multiqc/multiqc_data   (-f was specified)
[2024-11-28 00:57:03,287] multiqc                                            [INFO   ]  Data        : ../data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/multiqc/multiqc_data
[2024-11-28 00:57:03,287] multiqc                                            [DEBUG  ]  Moving data file from '/tmp/tmpGuLRTp/multiqc_data/multiqc_general_stats.txt' to '/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/multiqc/multiqc_data'
[2024-11-28 00:57:03,288] multiqc                                            [DEBUG  ]  Moving data file from '/tmp/tmpGuLRTp/multiqc_data/multiqc_fastqc.txt' to '/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/multiqc/multiqc_data'
[2024-11-28 00:57:03,288] multiqc                                            [DEBUG  ]  Moving data file from '/tmp/tmpGuLRTp/multiqc_data/multiqc_sources.txt' to '/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/multiqc/multiqc_data'
[2024-11-28 00:57:03,288] multiqc                                            [DEBUG  ]  Moving data file from '/tmp/tmpGuLRTp/multiqc_data/multiqc_cutadapt.txt' to '/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/multiqc/multiqc_data'
[2024-11-28 00:57:03,288] multiqc                                            [DEBUG  ]  Moving data file from '/tmp/tmpGuLRTp/multiqc_data/multiqc_featureCounts.txt' to '/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/multiqc/multiqc_data'
[2024-11-28 00:57:03,288] multiqc                                            [DEBUG  ]  Moving data file from '/tmp/tmpGuLRTp/multiqc_data/multiqc_star.txt' to '/app/data/results/fLkuRabeWWDwmlIgxa9TmFxWSP8LzEPOnHPEKOEk/results/multiqc/multiqc_data'
[2024-11-28 00:57:03,379] multiqc                                            [INFO   ]  MultiQC complete
