Statistics

Runs 916
Samples 57,501
Unique samples 38,246
Total processed reads 982,711,223,033
Total valid reads 807,072,072,392
Total reads in unique samples 564,801,196,913

Used databases

Name Version
miRBase 21
Ensembl ncRNA 85
NCBI RefSeq
(bacteria & viruses)
74
piRBase 1.0
GtRNAdb Accessed
10.09.2016
NONCODE 2016

miRMaster is a comprehensive analysis framework for NGS miRNA samples. Samples are directly preprocessed in the browser before being uploaded to our server.

Its core feature is the prediction of novel miRNAs. In addition to novel miRNA candidates, miRNA and other ncRNA expression is quantified, isoforms of miRNAs are reported and variants in miRNAs are searched.

Further it performs mapping against the NCBI RefSeq collection of bacterial and viral genomes, thereby allowing the detection of contaminations, infections or exogenous miRNAs.

If you have used miRMaster in your work please cite:


T. Fehlmann, C. Backes, M. Kahraman, J. Haas, N. Ludwig, A. E. Posch, M. L. Würstle, M. Hübenthal, A. Franke, B. Meder, E. Meese, A. Keller; Web-based NGS data analysis using miRMaster: a large-scale meta-analysis of human miRNAs. Nucleic Acids Res 2017 gkx595. doi: 10.1093/nar/gkx595

Supported browsers: miRMaster was tested with Google Chrome 53 and Mozilla Firefox 48.

Links